Utilities (utils
)¶
Genes¶
-
gepyto.utils.genes.
ensembl_genes_in_region
(region, bare=False, build='GRCh37')[source]¶ - Queries a genome region of the form chr3:123-456 for genes using Ensembl
- API.
Parameters: Returns: A list of
gepyto.structures.genes.Gene
.Return type:
Variants¶
-
gepyto.utils.variants.
ensembl_variants_in_region
(region, build='GRCh37')[source]¶ - Queries a genome region of the form chr3:123-456 for variants using
- Ensembl API.
Parameters: - region (str or gepyto Region) – The region to query.
- build (str) – The genome build to use (GRCh37 or GRCh38).
Returns: A list of
gepyto.structures.variants.Variant
or a subclass.Return type: Warning
If the Region is not contiguous, this will also return all the variants that are in the “gaps”.